Synthesis and structure of 2-amino-4-methylpyridin-1-ium hydrogen squarate

Vetrivel, Vanitha and Balakrishnan, Thangavelu and Marimuthu, Nishandhini (2025) Synthesis and structure of 2-amino-4-methylpyridin-1-ium hydrogen squarate. Acta Crystallographica Section E Crystallographic Communications, 81 (12). pp. 1189-1194. ISSN 2056-9890

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Abstract

Synthesis and structure of 2-amino-4-methylpyridin-1-ium hydrogen squarate Vanitha Vetrivel https://ror.org/02w7vnb60 Thangavelu Balakrishnan https://ror.org/02w7vnb60 Nishandhini Marimuthu https://ror.org/00tscx035

The title salt (systematic name: 2-amino-4-methylpyridin-1-ium 2-hydroxy-3,4-dioxocyclobut-1-en-1-olate), C 6 H 9 N 2 + ·C 4 HO 4 − , was obtained by the proton-transfer reaction between 2-amino-4-methylpyridine and squaric acid in aqueous solution: protonation occurs at the pyridine nitrogen atom, while squaric acid is singly deprotonated. In the crystal, the cations and anions are linked by N—H...O, O—H...O, and C—H...O hydrogen bonds, forming infinite layers. These layers are consolidated by π–π stacking interactions, resulting in a columnar packing arrangement. Hirshfeld surface analysis reveals that O...H/H...O contacts dominate the intermolecular interactions, consistent with the hydrogen-bonding network observed in the crystal structure.
11 28 2025 12 01 2025 11 21 2025 1189 1194 S205698902501045X 1.0 10.1107/cm_01 iucr.org wiley.com iucrj.org true Acta Crystallographica Section E: Crystallographic Communications research communications Available Yes Single blind 31 October 2025 21 November 2025 28 November 2025 This article has supporting information © 2025 Vetrivel et al. Creative Commons Attribution (CC-BY) https://creativecommons.org/licenses/by/4.0/legalcode https://creativecommons.org/licenses/by/4.0/legalcode Crystal structure: contains datablocks I (crystallographic information file) 10.1107/S205698902501045X/hb8170sup1.cif Structure factors: contains datablocks I (hkl structure-factor file) 10.1107/S205698902501045X/hb8170Isup3.hkl Supplementary material (chemical markup language file) 10.1107/S205698902501045X/hb8170Isup3.cml 10.1107/S205698902501045X https://journals.iucr.org/paper?S205698902501045X https://journals.iucr.org/e/issues/2025/12/00/hb8170/hb8170.pdf https://journals.iucr.org/e/issues/2025/12/00/hb8170/hb8170.pdf Mol. Pharm. Aakeröy 4 317 2007 10.1021/mp060126o Acta Cryst. B Allen 69 514 2013 10.1107/S2052519213020277 Acta Cryst. B Bertolasi 57 591 2001 10.1107/S010876810100814X Bruker (2021). APEX4, SAINT and XPREP. Bruker AXS Inc., Madison, Wisconsin, USA. Acta Cryst. B Bruno 58 389 2002 10.1107/S0108768102003324 Eur. J. Med. Chem. Chasák 209 112872 2021 10.1016/j.ejmech.2020.112872 CrystEngComm Cruz-Cabeza 14 6362 2012 10.1039/c2ce26055g Faraday Discuss. Cruz-Cabeza 235 446 2022 10.1039/D1FD00081K J. Mol. Struct. Dega-Szafran 1007 113 2012 10.1016/j.molstruc.2011.10.030 J. Mol. Struct. Dega-Szafran 1015 86 2012 10.1016/j.molstruc.2012.02.019 J. Mol. Struct. Dega-Szafran 1054-1055 170 2013 10.1016/j.molstruc.2013.09.044 J. Mol. Struct. Dega-Szafran 1030 184 2012 10.1016/j.molstruc.2012.04.028 Aust. J. Chem. Dega-Szafran 66 836 2013 10.1071/CH13121 CrystEngComm Delori 15 2916 2013 10.1039/c3ce26765b J. Appl. Cryst. Farrugia 45 849 2012 10.1107/S0021889812029111 Acta Cryst. B Gilli 57 859 2001 10.1107/S0108768101014963 J. Am. Chem. Soc. Gilli 124 13554 2002 10.1021/ja020589x CrystEngComm Gołdyn 24 7821 2022 10.1039/D2CE00760F Cryst. Growth Des. Goswami 25 6183 2025 10.1021/acs.cgd.5c00643 Acta Cryst. B Groom 72 171 2016 10.1107/S2052520616003954 Bioconjugate Chem. Grus 32 1223 2021 10.1021/acs.bioconjchem.1c00305 Cryst. Growth Des. Huang 22 6504 2022 10.1021/acs.cgd.2c00722 Heliyon Karuppusamy 9 e18260 2023 10.1016/j.heliyon.2023.e18260 10.1021/acs.cgd.5c01068 K. K. M. S., Dey, S., Menon, A. M., Psr, F. N., Kumari, A., Adak, M. K., Shashiprabha, Ghosh, D. & Chopra, D. (2025). Cryst. Growth Des. 25, 8252-8270. Struct. Chem. Korkmaz 22 1249 2011 10.1007/s11224-011-9819-7 J. Appl. Cryst. Krause 48 3 2015 10.1107/S1600576714022985 Opt. Laser Technol. Krishnakumar 101 91 2018 10.1016/j.optlastec.2017.11.012 Sens. Actuators B Chem. Laramie 243 1191 2017 10.1016/j.snb.2016.12.051 CrystEngComm Lemmerer 17 3591 2015 10.1039/C5CE00102A J. Org. Chem. MacDonald 33 4559 1968 10.1021/jo01276a069 J. Appl. Cryst. Macrae 53 226 2020 10.1107/S1600576719014092 J. Mol. Struct. Madhankumar 1201 127151 2020 10.1016/j.molstruc.2019.127151 Sabareesh, V., Ranganathan, A. & Kulkarni, G. U. (2001). CSD Communication (refcode QIRKAD). CCDC, Cambridge, England. Cryst. Growth Des. Sangtani 17 3071 2017 10.1021/acs.cgd.6b01868 Acta Cryst. E Seidel 80 973 2024 10.1107/S2056989024008235 Acta Cryst. A Sheldrick 71 3 2015 10.1107/S2053273314026370 Acta Cryst. C Sheldrick 71 3 2015 10.1107/S2053229614024218 Opt. Mater. Thirupugalmani 49 158 2015 10.1016/j.optmat.2015.09.014 Turner, M., McKinnon, J., Wolff, S., Grimwood, D., Spackman, P., Jayatilaka, D. & Spackman, M. (2017). University of Western Australia. RSC Adv. Tyagi 6 24565 2016 10.1039/C5RA18983G Cryst. Growth Des. Zhao 20 3747 2020 10.1021/acs.cgd.0c00022 Crystal structure: contains datablocks I Crystallographic Information File 10.1107/S205698902501045X/hb8170sup1.cif https://journals.iucr.org/e/issues/2025/12/00/hb8170/hb8170sup1.cif Structure factors: contains datablocks I HKL structure-factor file 10.1107/S205698902501045X/hb8170Isup3.hkl https://journals.iucr.org/e/issues/2025/12/00/hb8170/hb8170Isup3.hkl Supplementary material Chemical Markup Language file 10.1107/S205698902501045X/hb8170Isup3.cml https://journals.iucr.org/e/issues/2025/12/00/hb8170/hb8170Isup3.cml

Item Type: Article
Subjects: Bioinformatics > Bioinformatics
Domains: Bioinformatics
Depositing User: Mr IR Admin
Date Deposited: 12 May 2026 05:52
Last Modified: 12 May 2026 05:52
URI: https://ir.vistas.ac.in/id/eprint/14979

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